Gene discovery in the wood-forming tissues of poplar: analysis of 5, 692 expressed sequence tags.
Identifieur interne : 004945 ( Main/Exploration ); précédent : 004944; suivant : 004946Gene discovery in the wood-forming tissues of poplar: analysis of 5, 692 expressed sequence tags.
Auteurs : F. Sterky [Suède] ; S. Regan ; J. Karlsson ; M. Hertzberg ; A. Rohde ; A. Holmberg ; B. Amini ; R. Bhalerao ; M. Larsson ; R. Villarroel ; M. Van Montagu ; G. Sandberg ; O. Olsson ; T T Teeri ; W. Boerjan ; P. Gustafsson ; M. Uhlén ; B. Sundberg ; J. LundebergSource :
- Proceedings of the National Academy of Sciences of the United States of America [ 0027-8424 ] ; 1998.
Descripteurs français
- KwdFr :
- ADN complémentaire (MeSH), Arabidopsis (génétique), Arbres (anatomie et histologie), Arbres (cytologie), Arbres (génétique), Banque de gènes (MeSH), Brassica (génétique), Clonage moléculaire (MeSH), Croisements génétiques (MeSH), Données de séquences moléculaires (MeSH), Enzymes (génétique), Expression des gènes (MeSH), Gènes de plante (MeSH), Oryza (génétique), Protéines végétales (génétique), Zea mays (génétique), Étiquettes de séquences exprimées (MeSH).
- MESH :
- anatomie et histologie : Arbres.
- cytologie : Arbres.
- génétique : Arabidopsis, Arbres, Brassica, Enzymes, Oryza, Protéines végétales, Zea mays.
- ADN complémentaire, Banque de gènes, Clonage moléculaire, Croisements génétiques, Données de séquences moléculaires, Expression des gènes, Gènes de plante, Étiquettes de séquences exprimées.
English descriptors
- KwdEn :
- Arabidopsis (genetics), Brassica (genetics), Cloning, Molecular (MeSH), Crosses, Genetic (MeSH), DNA, Complementary (MeSH), Enzymes (genetics), Expressed Sequence Tags (MeSH), Gene Expression (MeSH), Gene Library (MeSH), Genes, Plant (MeSH), Molecular Sequence Data (MeSH), Oryza (genetics), Plant Proteins (genetics), Trees (anatomy & histology), Trees (cytology), Trees (genetics), Zea mays (genetics).
- MESH :
- chemical , genetics : Enzymes, Plant Proteins.
- chemical : DNA, Complementary.
- anatomy & histology : Trees.
- cytology : Trees.
- genetics : Arabidopsis, Brassica, Oryza, Trees, Zea mays.
- Cloning, Molecular, Crosses, Genetic, Expressed Sequence Tags, Gene Expression, Gene Library, Genes, Plant, Molecular Sequence Data.
Abstract
A rapidly growing area of genome research is the generation of expressed sequence tags (ESTs) in which large numbers of randomly selected cDNA clones are partially sequenced. The collection of ESTs reflects the level and complexity of gene expression in the sampled tissue. To date, the majority of plant ESTs are from nonwoody plants such as Arabidopsis, Brassica, maize, and rice. Here, we present a large-scale production of ESTs from the wood-forming tissues of two poplars, Populus tremula L. x tremuloides Michx. and Populus trichocarpa 'Trichobel.' The 5,692 ESTs analyzed represented a total of 3,719 unique transcripts for the two cDNA libraries. Putative functions could be assigned to 2,245 of these transcripts that corresponded to 820 protein functions. Of specific interest to forest biotechnology are the 4% of ESTs involved in various processes of cell wall formation, such as lignin and cellulose synthesis, 5% similar to developmental regulators and members of known signal transduction pathways, and 2% involved in hormone biosynthesis. An additional 12% of the ESTs showed no significant similarity to any other DNA or protein sequences in existing databases. The absence of these sequences from public databases may indicate a specific role for these proteins in wood formation. The cDNA libraries and the accompanying database are valuable resources for forest research directed toward understanding the genetic control of wood formation and future endeavors to modify wood and fiber properties for industrial use.
DOI: 10.1073/pnas.95.22.13330
PubMed: 9789088
PubMed Central: PMC23802
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Lundeberg</name></author></analytic><series><title level="j">Proceedings of the National Academy of Sciences of the United States of America</title><idno type="ISSN">0027-8424</idno><imprint><date when="1998" type="published">1998</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Arabidopsis (genetics)</term><term>Brassica (genetics)</term><term>Cloning, Molecular (MeSH)</term><term>Crosses, Genetic (MeSH)</term><term>DNA, Complementary (MeSH)</term><term>Enzymes (genetics)</term><term>Expressed Sequence Tags (MeSH)</term><term>Gene Expression (MeSH)</term><term>Gene Library (MeSH)</term><term>Genes, Plant (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Oryza (genetics)</term><term>Plant Proteins (genetics)</term><term>Trees (anatomy & histology)</term><term>Trees (cytology)</term><term>Trees (genetics)</term><term>Zea mays (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN complémentaire (MeSH)</term><term>Arabidopsis (génétique)</term><term>Arbres (anatomie et histologie)</term><term>Arbres (cytologie)</term><term>Arbres (génétique)</term><term>Banque de gènes (MeSH)</term><term>Brassica (génétique)</term><term>Clonage moléculaire (MeSH)</term><term>Croisements génétiques (MeSH)</term><term>Données de séquences moléculaires (MeSH)</term><term>Enzymes (génétique)</term><term>Expression des gènes (MeSH)</term><term>Gènes de plante (MeSH)</term><term>Oryza (génétique)</term><term>Protéines végétales (génétique)</term><term>Zea mays (génétique)</term><term>Étiquettes de séquences exprimées (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Enzymes</term><term>Plant Proteins</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>DNA, Complementary</term></keywords><keywords scheme="MESH" qualifier="anatomie et histologie" xml:lang="fr"><term>Arbres</term></keywords><keywords scheme="MESH" qualifier="anatomy & histology" xml:lang="en"><term>Trees</term></keywords><keywords scheme="MESH" qualifier="cytologie" xml:lang="fr"><term>Arbres</term></keywords><keywords scheme="MESH" qualifier="cytology" xml:lang="en"><term>Trees</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Arabidopsis</term><term>Brassica</term><term>Oryza</term><term>Trees</term><term>Zea mays</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Arabidopsis</term><term>Arbres</term><term>Brassica</term><term>Enzymes</term><term>Oryza</term><term>Protéines végétales</term><term>Zea mays</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Cloning, Molecular</term><term>Crosses, Genetic</term><term>Expressed Sequence Tags</term><term>Gene Expression</term><term>Gene Library</term><term>Genes, Plant</term><term>Molecular Sequence Data</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>ADN complémentaire</term><term>Banque de gènes</term><term>Clonage moléculaire</term><term>Croisements génétiques</term><term>Données de séquences moléculaires</term><term>Expression des gènes</term><term>Gènes de plante</term><term>Étiquettes de séquences exprimées</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A rapidly growing area of genome research is the generation of expressed sequence tags (ESTs) in which large numbers of randomly selected cDNA clones are partially sequenced. The collection of ESTs reflects the level and complexity of gene expression in the sampled tissue. To date, the majority of plant ESTs are from nonwoody plants such as Arabidopsis, Brassica, maize, and rice. Here, we present a large-scale production of ESTs from the wood-forming tissues of two poplars, Populus tremula L. x tremuloides Michx. and Populus trichocarpa 'Trichobel.' The 5,692 ESTs analyzed represented a total of 3,719 unique transcripts for the two cDNA libraries. Putative functions could be assigned to 2,245 of these transcripts that corresponded to 820 protein functions. Of specific interest to forest biotechnology are the 4% of ESTs involved in various processes of cell wall formation, such as lignin and cellulose synthesis, 5% similar to developmental regulators and members of known signal transduction pathways, and 2% involved in hormone biosynthesis. An additional 12% of the ESTs showed no significant similarity to any other DNA or protein sequences in existing databases. The absence of these sequences from public databases may indicate a specific role for these proteins in wood formation. The cDNA libraries and the accompanying database are valuable resources for forest research directed toward understanding the genetic control of wood formation and future endeavors to modify wood and fiber properties for industrial use.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">9789088</PMID><DateCompleted><Year>1998</Year><Month>11</Month><Day>24</Day></DateCompleted><DateRevised><Year>2019</Year><Month>05</Month><Day>01</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0027-8424</ISSN><JournalIssue CitedMedium="Print"><Volume>95</Volume><Issue>22</Issue><PubDate><Year>1998</Year><Month>Oct</Month><Day>27</Day></PubDate></JournalIssue><Title>Proceedings of the National Academy of Sciences of the United States of America</Title><ISOAbbreviation>Proc Natl Acad Sci U S A</ISOAbbreviation></Journal><ArticleTitle>Gene discovery in the wood-forming tissues of poplar: analysis of 5, 692 expressed sequence tags.</ArticleTitle><Pagination><MedlinePgn>13330-5</MedlinePgn></Pagination><Abstract><AbstractText>A rapidly growing area of genome research is the generation of expressed sequence tags (ESTs) in which large numbers of randomly selected cDNA clones are partially sequenced. The collection of ESTs reflects the level and complexity of gene expression in the sampled tissue. To date, the majority of plant ESTs are from nonwoody plants such as Arabidopsis, Brassica, maize, and rice. Here, we present a large-scale production of ESTs from the wood-forming tissues of two poplars, Populus tremula L. x tremuloides Michx. and Populus trichocarpa 'Trichobel.' The 5,692 ESTs analyzed represented a total of 3,719 unique transcripts for the two cDNA libraries. Putative functions could be assigned to 2,245 of these transcripts that corresponded to 820 protein functions. Of specific interest to forest biotechnology are the 4% of ESTs involved in various processes of cell wall formation, such as lignin and cellulose synthesis, 5% similar to developmental regulators and members of known signal transduction pathways, and 2% involved in hormone biosynthesis. An additional 12% of the ESTs showed no significant similarity to any other DNA or protein sequences in existing databases. The absence of these sequences from public databases may indicate a specific role for these proteins in wood formation. The cDNA libraries and the accompanying database are valuable resources for forest research directed toward understanding the genetic control of wood formation and future endeavors to modify wood and fiber properties for industrial use.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Sterky</LastName><ForeName>F</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Department of Biotechnology, Kungl Tekniska Högskolan, Royal Institute of Technology, SE-10044 Stockholm, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Regan</LastName><ForeName>S</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Karlsson</LastName><ForeName>J</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Hertzberg</LastName><ForeName>M</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Rohde</LastName><ForeName>A</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Holmberg</LastName><ForeName>A</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Amini</LastName><ForeName>B</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Bhalerao</LastName><ForeName>R</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Larsson</LastName><ForeName>M</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Villarroel</LastName><ForeName>R</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Van Montagu</LastName><ForeName>M</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Sandberg</LastName><ForeName>G</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Olsson</LastName><ForeName>O</ForeName><Initials>O</Initials></Author><Author ValidYN="Y"><LastName>Teeri</LastName><ForeName>T T</ForeName><Initials>TT</Initials></Author><Author 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Amini</name><name sortKey="Bhalerao, R" sort="Bhalerao, R" uniqKey="Bhalerao R" first="R" last="Bhalerao">R. Bhalerao</name><name sortKey="Boerjan, W" sort="Boerjan, W" uniqKey="Boerjan W" first="W" last="Boerjan">W. Boerjan</name><name sortKey="Gustafsson, P" sort="Gustafsson, P" uniqKey="Gustafsson P" first="P" last="Gustafsson">P. Gustafsson</name><name sortKey="Hertzberg, M" sort="Hertzberg, M" uniqKey="Hertzberg M" first="M" last="Hertzberg">M. Hertzberg</name><name sortKey="Holmberg, A" sort="Holmberg, A" uniqKey="Holmberg A" first="A" last="Holmberg">A. Holmberg</name><name sortKey="Karlsson, J" sort="Karlsson, J" uniqKey="Karlsson J" first="J" last="Karlsson">J. Karlsson</name><name sortKey="Larsson, M" sort="Larsson, M" uniqKey="Larsson M" first="M" last="Larsson">M. Larsson</name><name sortKey="Lundeberg, J" sort="Lundeberg, J" uniqKey="Lundeberg J" first="J" last="Lundeberg">J. Lundeberg</name><name sortKey="Olsson, O" sort="Olsson, O" uniqKey="Olsson O" first="O" last="Olsson">O. Olsson</name><name sortKey="Regan, S" sort="Regan, S" uniqKey="Regan S" first="S" last="Regan">S. Regan</name><name sortKey="Rohde, A" sort="Rohde, A" uniqKey="Rohde A" first="A" last="Rohde">A. Rohde</name><name sortKey="Sandberg, G" sort="Sandberg, G" uniqKey="Sandberg G" first="G" last="Sandberg">G. Sandberg</name><name sortKey="Sundberg, B" sort="Sundberg, B" uniqKey="Sundberg B" first="B" last="Sundberg">B. Sundberg</name><name sortKey="Teeri, T T" sort="Teeri, T T" uniqKey="Teeri T" first="T T" last="Teeri">T T Teeri</name><name sortKey="Uhlen, M" sort="Uhlen, M" uniqKey="Uhlen M" first="M" last="Uhlén">M. Uhlén</name><name sortKey="Van Montagu, M" sort="Van Montagu, M" uniqKey="Van Montagu M" first="M" last="Van Montagu">M. Van Montagu</name><name sortKey="Villarroel, R" sort="Villarroel, R" uniqKey="Villarroel R" first="R" last="Villarroel">R. Villarroel</name></noCountry><country name="Suède"><noRegion><name sortKey="Sterky, F" sort="Sterky, F" uniqKey="Sterky F" first="F" last="Sterky">F. Sterky</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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